(base) mona@mona:~/research$ conda env create --name dlc --file=DLC-GPU.yaml Collecting package metadata (repodata.json): done Solving environment: done Downloading and Extracting Packages gettext-0.19.8.1 | 2.9 MB | ################################################################################################################################################################ | 100% ipython-7.18.1 | 989 KB | ################################################################################################################################################################ | 100% jupyter_console-6.2. | 26 KB | ################################################################################################################################################################ | 100% qtconsole-4.7.7 | 96 KB | ################################################################################################################################################################ | 100% prompt_toolkit-3.0.7 | 12 KB | ################################################################################################################################################################ | 100% geos-3.8.0 | 961 KB | ################################################################################################################################################################ | 100% pango-1.45.3 | 361 KB | ################################################################################################################################################################ | 100% shapely-1.7.1 | 390 KB | ################################################################################################################################################################ | 100% pyzmq-19.0.2 | 438 KB | ################################################################################################################################################################ | 100% nb_conda_kernels-2.3 | 26 KB | ################################################################################################################################################################ | 100% notebook-6.1.1 | 4.0 MB | ################################################################################################################################################################ | 100% harfbuzz-2.4.0 | 850 KB | ################################################################################################################################################################ | 100% jedi-0.17.2 | 912 KB | ################################################################################################################################################################ | 100% gstreamer-1.14.0 | 3.1 MB | ################################################################################################################################################################ | 100% argon2-cffi-20.1.0 | 46 KB | ################################################################################################################################################################ | 100% pyrsistent-0.17.3 | 89 KB | ################################################################################################################################################################ | 100% ipykernel-5.3.4 | 179 KB | ################################################################################################################################################################ | 100% nb_conda-2.2.1 | 32 KB | ################################################################################################################################################################ | 100% cffi-1.14.3 | 223 KB | ################################################################################################################################################################ | 100% glib-2.65.0 | 2.9 MB | ################################################################################################################################################################ | 100% fribidi-1.0.10 | 103 KB | ################################################################################################################################################################ | 100% Preparing transaction: done Verifying transaction: done Executing transaction: \ Enabling nb_conda_kernels... Status: enabled / Config option `kernel_spec_manager_class` not recognized by `EnableNBExtensionApp`. Enabling notebook extension nb_conda/main... - Validating: OK Enabling tree extension nb_conda/tree... - Validating: OK Config option `kernel_spec_manager_class` not recognized by `EnableServerExtensionApp`. Enabling: nb_conda - Writing config: /home/mona/anaconda3/envs/dlc/etc/jupyter - Validating... nb_conda 2.2.1 OK done Installing pip dependencies: / Ran pip subprocess with arguments: ['/home/mona/anaconda3/envs/dlc/bin/python', '-m', 'pip', 'install', '-U', '-r', '/home/mona/research/condaenv.i4wb4gx_.requirements.txt'] Pip subprocess output: Collecting deeplabcut Using cached deeplabcut-2.1.8.2-py3-none-any.whl (400 kB) Requirement already satisfied, skipping upgrade: certifi in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (2020.6.20) Collecting matplotlib==3.0.3 Using cached matplotlib-3.0.3-cp37-cp37m-manylinux1_x86_64.whl (13.0 MB) Collecting numpy==1.16.4 Using cached numpy-1.16.4-cp37-cp37m-manylinux1_x86_64.whl (17.3 MB) Collecting scikit-image Downloading scikit_image-0.17.2-cp37-cp37m-manylinux1_x86_64.whl (12.5 MB) Collecting scikit-learn Downloading scikit_learn-0.23.2-cp37-cp37m-manylinux1_x86_64.whl (6.8 MB) Requirement already satisfied, skipping upgrade: ipython-genutils in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (0.2.0) Collecting ruamel.yaml~=0.15 Using cached ruamel.yaml-0.16.12-py2.py3-none-any.whl (111 kB) Collecting tqdm Using cached tqdm-4.49.0-py2.py3-none-any.whl (69 kB) Requirement already satisfied, skipping upgrade: six in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (1.15.0) Collecting tables Using cached tables-3.6.1-cp37-cp37m-manylinux1_x86_64.whl (4.3 MB) Collecting tensorpack>=0.9.7.1 Using cached tensorpack-0.10.1-py2.py3-none-any.whl (291 kB) Collecting statsmodels Downloading statsmodels-0.12.0-cp37-cp37m-manylinux1_x86_64.whl (9.5 MB) Requirement already satisfied, skipping upgrade: ipython in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (7.18.1) Requirement already satisfied, skipping upgrade: setuptools in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (49.6.0.post20200814) Collecting pyyaml>=5.1 Using cached PyYAML-5.3.1.tar.gz (269 kB) Collecting intel-openmp Using cached intel_openmp-2020.0.133-py2.py3-none-manylinux1_x86_64.whl (919 kB) Collecting opencv-python~=3.4 Downloading opencv_python-3.4.11.43-cp37-cp37m-manylinux2014_x86_64.whl (49.1 MB) Requirement already satisfied, skipping upgrade: python-dateutil in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (2.8.1) Processing /home/mona/.cache/pip/wheels/db/37/b8/b3785332f8246f1306c2863553860ca65e1824fc4c8251c7f1/moviepy-1.0.1-py3-none-any.whl Collecting patsy Using cached patsy-0.5.1-py2.py3-none-any.whl (231 kB) Processing /home/mona/.cache/pip/wheels/88/96/68/c2be18e7406804be2e593e1c37845f2dd20ac2ce1381ce40b0/easydict-1.9-py3-none-any.whl Collecting pandas>=1.0. Using cached pandas-1.1.2-cp37-cp37m-manylinux1_x86_64.whl (10.5 MB) Requirement already satisfied, skipping upgrade: wheel in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (0.35.1) Collecting click Using cached click-7.1.2-py2.py3-none-any.whl (82 kB) Collecting imgaug Using cached imgaug-0.4.0-py2.py3-none-any.whl (948 kB) Collecting chardet Using cached chardet-3.0.4-py2.py3-none-any.whl (133 kB) Requirement already satisfied, skipping upgrade: scipy in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (1.5.2) Requirement already satisfied, skipping upgrade: h5py~=2.7 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (2.10.0) Collecting requests Using cached requests-2.24.0-py2.py3-none-any.whl (61 kB) Collecting kiwisolver>=1.0.1 Downloading kiwisolver-1.2.0-cp37-cp37m-manylinux1_x86_64.whl (88 kB) Requirement already satisfied, skipping upgrade: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from matplotlib==3.0.3->deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (2.4.7) Collecting cycler>=0.10 Using cached cycler-0.10.0-py2.py3-none-any.whl (6.5 kB) Collecting pillow!=7.1.0,!=7.1.1,>=4.3.0 Using cached Pillow-7.2.0-cp37-cp37m-manylinux1_x86_64.whl (2.2 MB) Collecting imageio>=2.3.0 Using cached imageio-2.9.0-py3-none-any.whl (3.3 MB) Collecting tifffile>=2019.7.26 Using cached tifffile-2020.9.22-py3-none-any.whl (153 kB) Collecting networkx>=2.0 Using cached networkx-2.5-py3-none-any.whl (1.6 MB) Collecting PyWavelets>=1.1.1 Downloading PyWavelets-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (4.4 MB) Collecting threadpoolctl>=2.0.0 Using cached threadpoolctl-2.1.0-py3-none-any.whl (12 kB) Collecting joblib>=0.11 Using cached joblib-0.16.0-py3-none-any.whl (300 kB) Collecting ruamel.yaml.clib>=0.1.2; platform_python_implementation == "CPython" and python_version < "3.9" Using cached ruamel.yaml.clib-0.2.2-cp37-cp37m-manylinux1_x86_64.whl (547 kB) Collecting numexpr>=2.6.2 Using cached numexpr-2.7.1-cp37-cp37m-manylinux1_x86_64.whl (162 kB) Collecting psutil>=5 Using cached psutil-5.7.2.tar.gz (460 kB) Collecting msgpack>=0.5.2 Downloading msgpack-1.0.0-cp37-cp37m-manylinux1_x86_64.whl (275 kB) Collecting msgpack-numpy>=0.4.4.2 Using cached msgpack_numpy-0.4.7-py2.py3-none-any.whl (6.4 kB) Collecting tabulate>=0.7.7 Using cached tabulate-0.8.7-py3-none-any.whl (24 kB) Requirement already satisfied, skipping upgrade: termcolor>=1.1 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from tensorpack>=0.9.7.1->deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (1.1.0) Requirement already satisfied, skipping upgrade: pyzmq>=16 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from tensorpack>=0.9.7.1->deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (19.0.2) Requirement already satisfied, skipping upgrade: traitlets>=4.2 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from ipython->deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (4.3.3) Requirement already satisfied, skipping upgrade: pygments in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from ipython->deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (2.7.1) Requirement already satisfied, skipping upgrade: prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from ipython->deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (3.0.7) Requirement already satisfied, skipping upgrade: pexpect>4.3; sys_platform != "win32" in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from ipython->deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (4.8.0) Requirement already satisfied, skipping upgrade: decorator in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from ipython->deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (4.4.2) Requirement already satisfied, skipping upgrade: jedi>=0.10 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from ipython->deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (0.17.2) Requirement already satisfied, skipping upgrade: pickleshare in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from ipython->deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (0.7.5) Requirement already satisfied, skipping upgrade: backcall in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from ipython->deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (0.2.0) Processing /home/mona/.cache/pip/wheels/12/36/1f/dc61e6ac10781d63cf6fa045eb09fa613a667384e12cb6e6e0/proglog-0.1.9-py3-none-any.whl Collecting imageio-ffmpeg>=0.2.0; python_version >= "3.4" Using cached imageio_ffmpeg-0.4.2-py3-none-manylinux2010_x86_64.whl (26.9 MB) Collecting pytz>=2017.2 Using cached pytz-2020.1-py2.py3-none-any.whl (510 kB) Requirement already satisfied, skipping upgrade: Shapely in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from imgaug->deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (1.7.1) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Using cached urllib3-1.25.10-py2.py3-none-any.whl (127 kB) Collecting idna<3,>=2.5 Using cached idna-2.10-py2.py3-none-any.whl (58 kB) Requirement already satisfied, skipping upgrade: wcwidth in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0->ipython->deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (0.2.5) Requirement already satisfied, skipping upgrade: ptyprocess>=0.5 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from pexpect>4.3; sys_platform != "win32"->ipython->deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (0.6.0) Requirement already satisfied, skipping upgrade: parso<0.8.0,>=0.7.0 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from jedi>=0.10->ipython->deeplabcut->-r /home/mona/research/condaenv.i4wb4gx_.requirements.txt (line 1)) (0.7.0) Building wheels for collected packages: pyyaml, psutil Building wheel for pyyaml (setup.py): started Building wheel for pyyaml (setup.py): finished with status 'done' Created wheel for pyyaml: filename=PyYAML-5.3.1-cp37-cp37m-linux_x86_64.whl size=44619 sha256=bb81132d4bd4786a05057991336e112ed3ff6dde5653560f264e447e3b2f0e9c Stored in directory: /home/mona/.cache/pip/wheels/5e/03/1e/e1e954795d6f35dfc7b637fe2277bff021303bd9570ecea653 Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.7.2-cp37-cp37m-linux_x86_64.whl size=292666 sha256=2b7326dd5f5f648c6f167599c04470dc27949e7d56211052d7231aa9318db886 Stored in directory: /home/mona/.cache/pip/wheels/2d/43/97/00701864a7bee6d9e1a52dd682537dcbf1d013d0e2e6f0c1f1 Successfully built pyyaml psutil Installing collected packages: kiwisolver, cycler, numpy, matplotlib, pillow, imageio, tifffile, networkx, PyWavelets, scikit-image, threadpoolctl, joblib, scikit-learn, ruamel.yaml.clib, ruamel.yaml, tqdm, numexpr, tables, psutil, msgpack, msgpack-numpy, tabulate, tensorpack, pytz, pandas, patsy, statsmodels, pyyaml, intel-openmp, opencv-python, proglog, chardet, urllib3, idna, requests, imageio-ffmpeg, moviepy, easydict, click, imgaug, deeplabcut Attempting uninstall: numpy Found existing installation: numpy 1.19.1 Uninstalling numpy-1.19.1: Successfully uninstalled numpy-1.19.1 Successfully installed PyWavelets-1.1.1 chardet-3.0.4 click-7.1.2 cycler-0.10.0 deeplabcut-2.1.8.2 easydict-1.9 idna-2.10 imageio-2.9.0 imageio-ffmpeg-0.4.2 imgaug-0.4.0 intel-openmp-2020.0.133 joblib-0.16.0 kiwisolver-1.2.0 matplotlib-3.0.3 moviepy-1.0.1 msgpack-1.0.0 msgpack-numpy-0.4.7 networkx-2.5 numexpr-2.7.1 numpy-1.16.4 opencv-python-3.4.11.43 pandas-1.1.2 patsy-0.5.1 pillow-7.2.0 proglog-0.1.9 psutil-5.7.2 pytz-2020.1 pyyaml-5.3.1 requests-2.24.0 ruamel.yaml-0.16.12 ruamel.yaml.clib-0.2.2 scikit-image-0.17.2 scikit-learn-0.23.2 statsmodels-0.12.0 tables-3.6.1 tabulate-0.8.7 tensorpack-0.10.1 threadpoolctl-2.1.0 tifffile-2020.9.22 tqdm-4.49.0 urllib3-1.25.10 done # # To activate this environment, use # # $ conda activate dlc # # To deactivate an active environment, use # # $ conda deactivate (base) mona@mona:~/research$ conda activate dlc (dlc) mona@mona:~/research$ pip install deeplabcut==2.2b8 Collecting deeplabcut==2.2b8 Using cached deeplabcut-2.2b8-py3-none-any.whl (663 kB) Requirement already satisfied: tables in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (3.6.1) Collecting opencv-python-headless Using cached opencv_python_headless-4.4.0.44-cp37-cp37m-manylinux2014_x86_64.whl (36.7 MB) Requirement already satisfied: python-dateutil in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (2.8.1) Requirement already satisfied: numpy==1.16.4 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (1.16.4) Requirement already satisfied: moviepy<=1.0.1 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (1.0.1) Requirement already satisfied: scikit-image in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (0.17.2) Requirement already satisfied: pyyaml in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (5.3.1) Requirement already satisfied: statsmodels>=0.11 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (0.12.0) Requirement already satisfied: scipy>=1.4 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (1.5.2) Collecting matplotlib==3.1.3 Using cached matplotlib-3.1.3-cp37-cp37m-manylinux1_x86_64.whl (13.1 MB) Processing /home/mona/.cache/pip/wheels/ce/e0/ee/a2b3c5caab3418c1ccd8c4de573d4cbe13315d7e8b0a55fbc2/filterpy-1.4.5-py3-none-any.whl Collecting tensorpack==0.9.8 Using cached tensorpack-0.9.8-py2.py3-none-any.whl (288 kB) Requirement already satisfied: scikit-learn in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (0.23.2) Requirement already satisfied: ruamel.yaml>=0.15.0 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (0.16.12) Requirement already satisfied: certifi in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (2020.6.20) Requirement already satisfied: pandas>=1.0.1 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (1.1.2) Requirement already satisfied: chardet in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (3.0.4) Requirement already satisfied: intel-openmp in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (2020.0.133) Requirement already satisfied: patsy in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (0.5.1) Requirement already satisfied: requests in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (2.24.0) Requirement already satisfied: setuptools in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (49.6.0.post20200814) Processing /home/mona/.cache/pip/wheels/fd/9b/71/f127d694e02eb40bcf18c7ae9613b88a6be4470f57a8528c5b/bayesian_optimization-1.2.0-py3-none-any.whl Requirement already satisfied: ipython in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (7.18.1) Requirement already satisfied: h5py in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (2.10.0) Requirement already satisfied: six in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (1.15.0) Requirement already satisfied: easydict in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (1.9) Requirement already satisfied: ipython-genutils in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (0.2.0) Requirement already satisfied: imgaug in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (0.4.0) Requirement already satisfied: tqdm in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (4.49.0) Requirement already satisfied: wheel in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (0.35.1) Collecting cython Downloading Cython-0.29.21-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) |████████████████████████████████| 2.0 MB 20 kB/s Collecting numba==0.51.1 Using cached numba-0.51.1-cp37-cp37m-manylinux2014_x86_64.whl (3.1 MB) Requirement already satisfied: click in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from deeplabcut==2.2b8) (7.1.2) Requirement already satisfied: numexpr>=2.6.2 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from tables->deeplabcut==2.2b8) (2.7.1) Requirement already satisfied: imageio-ffmpeg>=0.2.0; python_version >= "3.4" in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from moviepy<=1.0.1->deeplabcut==2.2b8) (0.4.2) Requirement already satisfied: proglog<=1.0.0 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from moviepy<=1.0.1->deeplabcut==2.2b8) (0.1.9) Requirement already satisfied: decorator<5.0,>=4.0.2 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from moviepy<=1.0.1->deeplabcut==2.2b8) (4.4.2) Requirement already satisfied: imageio<3.0,>=2.5; python_version >= "3.4" in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from moviepy<=1.0.1->deeplabcut==2.2b8) (2.9.0) Requirement already satisfied: networkx>=2.0 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from scikit-image->deeplabcut==2.2b8) (2.5) Requirement already satisfied: pillow!=7.1.0,!=7.1.1,>=4.3.0 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from scikit-image->deeplabcut==2.2b8) (7.2.0) Requirement already satisfied: tifffile>=2019.7.26 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from scikit-image->deeplabcut==2.2b8) (2020.9.22) Requirement already satisfied: PyWavelets>=1.1.1 in 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/home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from ipython->deeplabcut==2.2b8) (0.7.5) Requirement already satisfied: prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from ipython->deeplabcut==2.2b8) (3.0.7) Requirement already satisfied: pexpect>4.3; sys_platform != "win32" in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from ipython->deeplabcut==2.2b8) (4.8.0) Requirement already satisfied: jedi>=0.10 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from ipython->deeplabcut==2.2b8) (0.17.2) Requirement already satisfied: pygments in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from ipython->deeplabcut==2.2b8) (2.7.1) Requirement already satisfied: Shapely in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from imgaug->deeplabcut==2.2b8) (1.7.1) Requirement already satisfied: opencv-python in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from imgaug->deeplabcut==2.2b8) (3.4.11.43) Collecting llvmlite<0.35,>=0.34.0.dev0 Using cached llvmlite-0.34.0-cp37-cp37m-manylinux2010_x86_64.whl (24.6 MB) Requirement already satisfied: wcwidth in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0->ipython->deeplabcut==2.2b8) (0.2.5) Requirement already satisfied: ptyprocess>=0.5 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from pexpect>4.3; sys_platform != "win32"->ipython->deeplabcut==2.2b8) (0.6.0) Requirement already satisfied: parso<0.8.0,>=0.7.0 in /home/mona/anaconda3/envs/dlc/lib/python3.7/site-packages (from jedi>=0.10->ipython->deeplabcut==2.2b8) (0.7.0) Installing collected packages: opencv-python-headless, matplotlib, filterpy, tensorpack, bayesian-optimization, cython, llvmlite, numba, deeplabcut Attempting uninstall: matplotlib Found existing installation: matplotlib 3.0.3 Uninstalling matplotlib-3.0.3: Successfully uninstalled matplotlib-3.0.3 Attempting uninstall: tensorpack Found existing installation: tensorpack 0.10.1 Uninstalling tensorpack-0.10.1: Successfully uninstalled tensorpack-0.10.1 Attempting uninstall: deeplabcut Found existing installation: deeplabcut 2.1.8.2 Uninstalling deeplabcut-2.1.8.2: Successfully uninstalled deeplabcut-2.1.8.2 Successfully installed bayesian-optimization-1.2.0 cython-0.29.21 deeplabcut-2.2b8 filterpy-1.4.5 llvmlite-0.34.0 matplotlib-3.1.3 numba-0.51.1 opencv-python-headless-4.4.0.44 tensorpack-0.9.8 (dlc) mona@mona:~/research$ ipython Python 3.7.9 (default, Aug 31 2020, 12:42:55) Type 'copyright', 'credits' or 'license' for more information IPython 7.18.1 -- An enhanced Interactive Python. Type '?' for help. In [1]: import deeplabcut as dlc --------------------------------------------------------------------------- CalledProcessError Traceback (most recent call last) in ----> 1 import deeplabcut as dlc ~/anaconda3/envs/dlc/lib/python3.7/site-packages/deeplabcut/__init__.py in 36 else: # standard use [wxpython supported] 37 mpl.use("WxAgg") ---> 38 from deeplabcut import generate_training_dataset 39 from deeplabcut import refine_training_dataset 40 from deeplabcut.generate_training_dataset import ( ~/anaconda3/envs/dlc/lib/python3.7/site-packages/deeplabcut/generate_training_dataset/__init__.py in 16 else: 17 from deeplabcut.generate_training_dataset.auxfun_drag_label import * ---> 18 from deeplabcut.generate_training_dataset.labeling_toolbox import * 19 from deeplabcut.generate_training_dataset.multiple_individuals_labeling_toolbox import * 20 from deeplabcut.generate_training_dataset.frame_extraction_toolbox import * ~/anaconda3/envs/dlc/lib/python3.7/site-packages/deeplabcut/generate_training_dataset/labeling_toolbox.py in 31 32 from deeplabcut.generate_training_dataset import auxfun_drag_label ---> 33 from deeplabcut.utils import auxiliaryfunctions 34 35 # ########################################################################### ~/anaconda3/envs/dlc/lib/python3.7/site-packages/deeplabcut/utils/__init__.py in 4 from deeplabcut.utils.conversioncode import * 5 from deeplabcut.utils.frameselectiontools import * ----> 6 from deeplabcut.utils.make_labeled_video import * 7 from deeplabcut.utils.plotting import * 8 from deeplabcut.utils.video_processor import * ~/anaconda3/envs/dlc/lib/python3.7/site-packages/deeplabcut/utils/make_labeled_video.py in 26 import matplotlib.pyplot as plt 27 import numpy as np ---> 28 from matplotlib.animation import FFMpegWriter 29 from matplotlib.collections import LineCollection 30 from skimage.draw import circle, line_aa ~/anaconda3/envs/dlc/lib/python3.7/site-packages/matplotlib/animation.py in 735 # Combine ImageMagick options with pipe-based writing 736 @writers.register('imagemagick') --> 737 class ImageMagickWriter(ImageMagickBase, MovieWriter): 738 '''Pipe-based animated gif. 739 ~/anaconda3/envs/dlc/lib/python3.7/site-packages/matplotlib/animation.py in wrapper(writerClass) 118 def wrapper(writerClass): 119 self._registered[name] = writerClass --> 120 if writerClass.isAvailable(): 121 self.avail[name] = writerClass 122 return writerClass ~/anaconda3/envs/dlc/lib/python3.7/site-packages/matplotlib/animation.py in isAvailable(cls) 728 def isAvailable(cls): 729 try: --> 730 return super().isAvailable() 731 except FileNotFoundError: # May be raised by get_executable_info. 732 return False ~/anaconda3/envs/dlc/lib/python3.7/site-packages/matplotlib/animation.py in isAvailable(cls) 425 Check to see if a MovieWriter subclass is actually available. 426 ''' --> 427 return shutil.which(cls.bin_path()) is not None 428 429 ~/anaconda3/envs/dlc/lib/python3.7/site-packages/matplotlib/animation.py in bin_path(cls) 722 binpath = super().bin_path() 723 if binpath == 'convert': --> 724 binpath = mpl._get_executable_info('magick').executable 725 return binpath 726 ~/anaconda3/envs/dlc/lib/python3.7/site-packages/matplotlib/__init__.py in _get_executable_info(name) 383 raise FileNotFoundError( 384 "Failed to find an ImageMagick installation") --> 385 return impl([path, "--version"], r"^Version: ImageMagick (\S*)") 386 elif name == "pdftops": 387 info = impl(["pdftops", "-v"], "^pdftops version (.*)", ~/anaconda3/envs/dlc/lib/python3.7/site-packages/matplotlib/__init__.py in impl(args, regex, min_ver, ignore_exit_code) 328 output = _cpe.output 329 else: --> 330 raise _cpe 331 match = re.search(regex, output) 332 if match: ~/anaconda3/envs/dlc/lib/python3.7/site-packages/matplotlib/__init__.py in impl(args, regex, min_ver, ignore_exit_code) 323 output = subprocess.check_output( 324 args, stderr=subprocess.STDOUT, --> 325 universal_newlines=True, errors="replace") 326 except subprocess.CalledProcessError as _cpe: 327 if ignore_exit_code: ~/anaconda3/envs/dlc/lib/python3.7/subprocess.py in check_output(timeout, *popenargs, **kwargs) 409 410 return run(*popenargs, stdout=PIPE, timeout=timeout, check=True, --> 411 **kwargs).stdout 412 413 ~/anaconda3/envs/dlc/lib/python3.7/subprocess.py in run(input, capture_output, timeout, check, *popenargs, **kwargs) 510 if check and retcode: 511 raise CalledProcessError(retcode, process.args, --> 512 output=stdout, stderr=stderr) 513 return CompletedProcess(process.args, retcode, stdout, stderr) 514 CalledProcessError: Command '['convert', '--version']' returned non-zero exit status 1. In [2]: